I got it fully fix, and figured I should come back and explain what files I moved and probably shouldn't have on some of them.
The only way I can actually get booted back into OS to get into adm was to do a factory reset, which allowed the OS to actually boot, but the user interface kept freezing in about 7 minutes, and would never make a connection to the server like it was trying to do, so I never got to the end of setup to get into settings to enable USB debugging, but I found when you hit the connecting to server part, you can hit the search button and go into settings that way. Once I got through all this, by the time i activated the phone, which sometimes if you hit the next button fast enough, it will just skip activation, because i kept skipping it and going straight to login with your google account.
After finally getting a terminal and the UI crashing out on me, the system was still usable over adb. I still had su and Superuser.apk installed, but they wouldn't go. I kept attempting to re-exploit the device and try to hit the wifi or bluetooth on/off button in settings, but I never had enough time. I basically kept trying to exploit the machine hoping it would just budge, but it seem to never do it, even though rootshell got installed. I finally figured out that rootshell doesnt like to work when you goto it with a direct path, and seemed to work if you just type rootshell in the prompt.
I finally got root access and fixed my applications, since I never deleted them. I just renamed them .apk.old, encase something like this happened. I rebooted the the device over adb, and then it just stayed stuck on the damn motorola logo and would never go passed it. I don't know why this happened, but I rebooted it many times by taking the battery out, and putting it back it. I left it sitting on that screen for 30minutes and it did nothing, I then tried to see if I can get back into recovery mode and do another factory restore, which it allowed me to do, and now it running nice and fast and boots just like normal.
Here is a list of the files I renamed.
DLNA.apk
CarDock.apk
FMRadio.apk
VoiceCommands.apk
FMRadioService.apk
NewsWidget.apk
Blockbuster.apk
BlurUpdater.apk
DlnaSystemService.apk
Skype_mobile.live.apk
amazonmp3_1.7.22_signed_zipaligned.apk
Well, I hope this help someone encase they screwed up like I did.