Well, after some wipes and a re-install (as directed) and more time with the ROM all is well except for this one annoyance.
No matter what the setting under "Call settings", "Missed call LED notify" I get a blue LED notification every time the phone misses a call. Plus I see no facility for changing the color as I used a blue LED to let me know my girlfriend has texted me so this is doubly annoying.
If I could change the color to black or find another way to not even denote missed calls that might work.
Is this a bug for anyone else? Any ideas? (FYI v9)