Just went out - this will fix links2sd, apps2sd, and who knows how many other apps ... if you have had weird issues - this may well clear it up - this should also fix VPN apps. You should get prompted the next time you open tools. If not - exit tools (via the BACK button, not HOME). Open tools again. If you still don't, here it is, install in recovery just like you would a ROM:
Thanks to MANATARMS for helping me troubleshoot this via his use of VPNC!!