This is another tool I had created, just changed a few things to be more user friendly and added a few small things. Let me know if you wanna see other things implemented into this.
Its another .bat file to use it simply unzip the attached file anywhere on your computer go into the unzipped folder and run the SystemFileManager.bat.
This .bat file can;
*backup your entire system
*backup your /system/app folder
*backup your /system/framework files
*install apps to /system/app
*install framework files to /system/framework
*install bootanimation to /data/local
*install bootanimation to /system/media
*reboot your phone
And now version 0.4 also adds;
*Create desc.txt for boot animations
*Reboot into recovery
You must have current drivers for your phone installed for this to work everything else needed is included in the attached zip.
Let me know if this is working for you and what else you would like to see it do.