After searching for hours I found this procedure on how to connect and charge and file transfer with the new ROM. Check it out if you are having trouble it may help.
Please note this is also used for usb debugging and other root tools etc...
How To: Set Up ADB/USB Drivers for Android Devices | The Unlockr
This was at least a short term fix. Without this done my phone would no longer install the correct drivers and I was getting a code 10 in trouble shooting = outdated Drivers but all drivers were up to date.
I am very new at this so maybe one of the guys can chime in and help identify what has happened here.