So I am using My Backup Pro right now when I wipe and flash a new ROM. But as it is I have to backup my apps in separate chunks because if I dont my internal memory fills up and it doesnt finish the recovery. So once I recover A-J apps I then have to use Apps2SD and go one by one putting most of them back on my SD card.
This takes forever especially since Apps2SD fails to move my apps over and over for no apparent reason?

I have to be doing it wrong, right?

Help!

Also, if I have multiple ROMs backed up in Clockwork that have apps running off my SD, am I stacking them up every time I install a new ROM?