So what App doesn't work for you, post up what's wrong and what you might have tried. I'll update this post and give a link back to helpful post numbers for these broken apps.
BusyBox: Now in the market, thanks Christim for the heads up!
Mototorch: WORKING NOW, Roberj13 who created the Blue Energy Theme has it working in update 1.04.1
Metamorph: Fix at post #77.
App2SD: Can not choose in Astro, it's grayed out. My card is not formatted for Apps2SD though. Works in Bugless Beast and Simply Stunning Roms.
HTC IME Keyboard v.24: Fix at post #53
SetCPU and TempMonitor: cannot show CPU temps, System Panel will display CPU Temps. P3 is working on this issue with the kernels for other apps to work.
Chrome to Phone: WORKING NOW, you need to download the newest Froyo build and register.
Youmail: had reboots around every half hour until I uninstalled it. My work around is to login at m.youmail.com and bookmark it to the desktop.
Maildroid: Seemed to have lots of Fc's.
Gemini Calendar: does not work at all (previously known and being fixed as we speak
Grocery IQ: It's been reported to work.
Terminal or Better Terminal: no cp command
BetterCut works, choose new shortcut/activity